Package: multigroup.vaccine
Type: Package
Title: Analyze Outbreak Models of Multi-Group Populations with
        Vaccination
Version: 0.1.1
Authors@R: 
    c(person("Damon", "Toth", , "damon.toth@hsc.utah.edu", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-7393-4814")),
           person("Jake", "Wagoner", , "jakew@sci.utah.edu", role = c("aut"),
           comment = c(ORCID = "0009-0000-5053-2281")),
           person("Willy", "Ray", , "william.ray@hsc.utah.edu", role = c("aut")),
           person("George", "Vega Yon", , "g.vegayon@gmail.com", role = c("ctb"), 
           comment = c(ORCID = "0000-0002-3171-0844")),
           person("Centers for Disease Control and Prevention's Center for Forecasting and Outbreak Analytics",
           role="fnd", comment = "Cooperative agreement CDC-RFA-FT-23-0069"))
Description: Model infectious disease dynamics in populations with
        multiple subgroups having different vaccination rates,
        transmission characteristics, and contact patterns. Calculate
        final and intermediate outbreak sizes, form age-structured
        contact models with automatic fetching of U.S. census data, and
        explore vaccination scenarios with an interactive 'shiny'
        dashboard for a model with two subgroups, as described in
        Nguyen et al. (2024) <doi:10.1016/j.jval.2024.03.039> and Duong
        et al. (2026) <doi:10.1093/ofid/ofaf695.217>.
License: MIT + file LICENSE
Encoding: UTF-8
LinkingTo: Rcpp
Imports: deSolve, graphics, shiny, stats, bslib (>= 0.9.0), htmltools,
        socialmixr, Rcpp
Suggests: knitr, rmarkdown, testthat (>= 3.0.0),
Config/testthat/edition: 3
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
URL: https://epiforesite.github.io/multigroup-vaccine/
Depends: R (>= 2.10)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://epiforesite.r-universe.dev
Date/Publication: 2026-06-14 20:03:53 UTC
RemoteUrl: https://github.com/EpiForeSITE/multigroup-vaccine
RemoteRef: HEAD
RemoteSha: 5c75b45c9f27c447947878c333ba60148d49703e
NeedsCompilation: yes
Packaged: 2026-06-14 21:42:28 UTC; root
Author: Damon Toth [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-7393-4814>),
  Jake Wagoner [aut] (ORCID: <https://orcid.org/0009-0000-5053-2281>),
  Willy Ray [aut],
  George Vega Yon [ctb] (ORCID: <https://orcid.org/0000-0002-3171-0844>),
  Centers for Disease Control and Prevention's Center for Forecasting and
    Outbreak Analytics [fnd] (Cooperative agreement CDC-RFA-FT-23-0069)
Maintainer: Damon Toth <damon.toth@hsc.utah.edu>